MmuEX6071752 @ mm10
Exon Skipping
Gene
ENSMUSG00000015854 | Cd5l
Description
CD5 antigen-like [Source:MGI Symbol;Acc:MGI:1334419]
Coordinates
chr3:87367541-87371073:+
Coord C1 exon
chr3:87367541-87367879
Coord A exon
chr3:87368449-87368769
Coord C2 exon
chr3:87370204-87371073
Length
321 bp
Sequences
Splice sites
3' ss Seq
CTTCCTCCTGCAACCTGCAGATC
3' ss Score
10.08
5' ss Seq
CAGGTACAT
5' ss Score
7.79
Exon sequences
Seq C1 exon
ACCCAGACAGTGACCTCCTCTTCATTCCAGAGGATGTGCGTCTAGTAGATGGCCCGGGGCACTGCCAGGGTCGAGTGGAGGTGCTCCACCAGTCCCAGTGGAGCACTGTGTGTAAAGCAGGCTGGAACTTACAGGTCTCAAAGGTGGTGTGCAGGCAGCTCGGGTGTGGGCGGGCATTACTGACCTACGGAAGCTGCAACAAGAATACTCAGGGCAAAGGACCCATCTGGATGGGCAAGATGTCGTGTTCTGGACAAGAAGCAAACCTTCGGTCTTGCCTTTTGAGTCGTTTGGAGAACAACTGTACCCATGGCGAGGACACATGGATGGAATGTGAAG
Seq A exon
ATCCTTTTGAGCTGAAGCTGGTGGGAGGAGACACCCCCTGCTCTGGGAGGTTGGAGGTGCTACACAAGGGTTCCTGGGGCTCTGTCTGTGATGACAACTGGGGAGAAAAGGAGGACCAAGTGGTCTGCAAGCAACTGGGTTGTGGGAAGTCCCTCCATCCATCCCCCAAAACCCGGAAAATCTATGGGCCTGGGGCAGGCCGCATCTGGCTGGATGACGTCAACTGCTCAGGGAAGGAACAGTCTCTGGAGTTCTGCCGGCACAGGTTGTGGGGGTACCACGACTGTACCCACAAGGAAGATGTGGAGGTGATCTGCACAG
Seq C2 exon
ACTTTGATGTGTGAATTGGATCCCTGCTTGTTCAGTGGGCCCTCATTCTCCCAGTGGTTACATCAGGCTGTGGGCTTTAGACACCTTTCCCTCAGCCTCGAAAGAGTCTGAACATTGTGTTCCTATCTTGATCTCAAGGCTACACGCCCCCATAATCACCTCAAGACATGAGCTGCTGAGCTCCCTTGCTGACCTTTCCAGCTGCCCTAGGCTCACTGTTCACTCCTTGGTGAACAGCCCCCACCTTTACTGTCTCTCCCCAGCCTGCCTGCAACTCTTGGGCCTGCCAGAGTGAGCAGCTGTACAGGCCAGGACTAAGACACAGCCTGTCTGTGAACACCACTGAGGATGTGACAACATGAGGAACACTTGAGAGGGAATGTGGGTAGACAGATTCTTGGAGGCAGGAGAGATAATACAATTGTTTAAATGCTTTTTAAACTTTGTAACAAGTGAAGTGATCATAATAATAACACTTCACTACTCTGCTTCTCTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015854-'1-4,'1-3,6-4=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=86.0)
A:
PF0053013=SRCR=WD(100=92.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAAAGGACCCATCTGGATG
R:
CCAAGGAGTGAACAGTGAGCC
Band lengths:
357-678
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types