RnoEX0018722 @ rn6
Exon Skipping
Gene
ENSRNOG00000023068 | Cd5l
Description
Cd5 molecule-like [Source:RGD Symbol;Acc:1308526]
Coordinates
chr2:186692587-186696117:+
Coord C1 exon
chr2:186692587-186692910
Coord A exon
chr2:186693498-186693818
Coord C2 exon
chr2:186695248-186696117
Length
321 bp
Sequences
Splice sites
3' ss Seq
CTTCCTCCTGCAACCTGCAGATC
3' ss Score
10.08
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
ACCCAGACAATCCAGAGAATGTGCGGCTAGTAGAGGGCCTCGGGCGCTGCCAGGGTCGACTGGAGGTGTTCTACCAGGGCCAGTGGAGCACTGTGTGCAAAGCAGGCTGGAACTTACAGGCTTCAAAGGTGGTGTGCAGGCAGCTGGGCTGTGGGCGAGCACTGCTGGCCCACAGATGCTGCAATAAGAATACCCAGGGCAAAGGACCCATCTGGATGAGCAAGATGTCATGTTCTGGACGAGAAGCAAACCTTCAGGACTGCCCTTTCAGTCCTTTGGAGAGCAATTGTACCCATGGCGAGGACACGTGGATGGAATGCGAAG
Seq A exon
ATCCCTTTGAGCTGAGGCTGGTAGGAGGAGACACCACCTGCTCTGGGAGGTTGGAGGTGCTGCACAAGGGTTCCTGGGGCTCTGTCTGTGATGACAGCTGGGGAGAAAAGGAGGACCAAGTGGTCTGCAAGCAACTGGGCTGTGGGAAGTCCCTCTTTCCATCCCCTAAAGCCCGCCAAAGCTTCGGGCCTGGGACAGGCCGCATCTGGCTGGATGACGTCAGTTGCTCAGGGAAGGAAGAGTCTCTTGAGCTCTGCCGGCACAGGCTGTGGGGATACCATGATTGCACGCACAAGGAAGATGTGGGCGTGATCTGCTCAG
Seq C2 exon
AGCTTTGATGTATGAGCTGGATCCCTGCTTGTTCATTGATTCTCCCAGTGGTTAAATCTGGCCTTGGGCTTTAGCCACCTCTCCCTCAACCTCTCAGGAGTCTGAACATTGTGCTCATATCTTGATCCAGCGTTACATGCTACCACAATCACCTCAAGATGTGAGCTGCTGTGCTCCTTGCCTGATGACATTTCCAATTTCCCTATGCTCACTGTTCACTCCTTGGTAACGTCCCCATCTTTACTTCTGCTCCCCAGCCTGCCTGCAACTCTTGGGCCTGCCAGAATTGTACAGGTCATGATTAAGGCACAGGCCATGATTAAGTCTGTGAGCCACACTGAGGATGTGACAACATGAGGAACACTTAAGAGGGAATGTGGGTAGACAGTATTTTGGAGGTTGAGGAGAAAATGCAACTGTTTAAATGCTTTTAAAACTTGTAACAAGTGAAGTGATCATGGCAATAACACTTTACTACTCTGTTTTCTCTCAGAGAAAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023068-'4-4,'4-3,5-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=89.9)
A:
PF0053013=SRCR=WD(100=92.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATCCAGAGAATGTGCGGCT
R:
GAACAAGCAGGGATCCAGCTC
Band lengths:
351-672
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]