HsaEX6035742 @ hg38
Exon Skipping
Gene
ENSG00000143278 | F13B
Description
coagulation factor XIII B chain [Source:HGNC Symbol;Acc:HGNC:3534]
Coordinates
chr1:197060899-197063057:-
Coord C1 exon
chr1:197062857-197063057
Coord A exon
chr1:197061784-197061873
Coord C2 exon
chr1:197060899-197061075
Length
90 bp
Sequences
Splice sites
3' ss Seq
GCGTTATGGTTGCGCTTCAGGGT
3' ss Score
6.83
5' ss Seq
ATGGTATAA
5' ss Score
2.05
Exon sequences
Seq C1 exon
AGAAACCCTGTGGTTTTCCTCATGTGGAAAATGGAAGAATTGCCCAATATTACTATACTTTTAAAAGCTTTTACTTTCCAATGAGCATAGACAAAAAATTGTCATTTTTCTGCTTGGCTGGTTATACCACTGAAAGTGGAAGACAAGAAGAGCAAACCACGTGTACAACAGAAGGCTGGTCTCCAGAGCCAAGGTGCTTCA
Seq A exon
GGTACAAAACCACTGGAGGGAAGGATGAAGAAGTGGTTCAATGTCTCTCTGATGGATGGTCTTCTCAACCAACCTGTAGGAAAGAACATG
Seq C2 exon
AAACATGTTTGGCTCCTGAATTATATAATGGAAATTATTCCACAACACAGAAAACATTCAAAGTGAAGGACAAAGTACAATACGAATGTGCTACTGGCTACTACACAGCTGGAGGAAAGAAGACAGAGGAGGTAGAATGTCTCACATACGGATGGTCTCTCACACCAAAATGTACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143278-'3-4,'3-3,4-4
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.059 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=92.6)
A:
PF0008415=Sushi=WD(100=88.9)
C2:
PF0008415=Sushi=WD(100=93.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGAAGAGCAAACCACGTGT
R:
TCCTCCAGCTGTGTAGTAGCC
Band lengths:
175-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains