GgaEX1023545 @ galGal4
Exon Skipping
Gene
ENSGALG00000002369 | F13B
Description
coagulation factor XIII, B polypeptide [Source:HGNC Symbol;Acc:HGNC:3534]
Coordinates
chr8:2632775-2634222:+
Coord C1 exon
chr8:2632775-2632975
Coord A exon
chr8:2633438-2633623
Coord C2 exon
chr8:2634046-2634222
Length
186 bp
Sequences
Splice sites
3' ss Seq
AACTGTCTCTTTTCATTTAGAAA
3' ss Score
7.94
5' ss Seq
TGGGTAGGA
5' ss Score
5.12
Exon sequences
Seq C1 exon
ATAAACTTTGTGATTTGCCGCATGTAGAAAATGGAAGGATTGCCCCATATTATTACAGTTTCAAAGGTTACTATTTCCCTATGCGTAAAGGAAAAAGCCTTTCCTATTCTTGTGTGGCTGGTTATACAACTGAAACCGGGACTCAGGATGGAAGAATAACTTGTATGGCGAAAGGATGGTCTCCGGTGCCACGATGCTACA
Seq A exon
AAAAATGTAATAAGCCTCTTCTGGAACATGGCGTGTTTTACGGTACAGAAATGTACTTCAACATACACGAGAAACTACAATACAAGTGTAACCAAGGGTACCACGCTCCCAGTGGCGGTACCGAAGATACGGTACAATGTCAGTCAGATGGATGGTCTTCCCAGGCAAGCTGTACTAAGACAGTGG
Seq C2 exon
AGTCATGTCAAGTACCTGAGTTACATCATGGCAACTACTTCACAACCCAGCGAGAGCTCCGAGTGAACGAAGCGCTGCTATACAAATGCGACGAAGGATACCGCACTGCAGGAGGAAATGCTACAGAAGAAGCAGTTTGTCTTGCGCATGGATGGTCCCTTACTCCAAACTGCTCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002369_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=92.6)
A:
PF0008415=Sushi=WD(100=88.9)
C2:
PF0008415=Sushi=WD(100=93.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTGAAACCGGGACTCAGGA
R:
CGAGCAGTTTGGAGTAAGGGAC
Band lengths:
250-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]