HsaEX6035742 @ hg19
Exon Skipping
Gene
ENSG00000143278 | F13B
Description
coagulation factor XIII, B polypeptide [Source:HGNC Symbol;Acc:3534]
Coordinates
chr1:197030029-197032187:-
Coord C1 exon
chr1:197031987-197032187
Coord A exon
chr1:197030914-197031099
Coord C2 exon
chr1:197030029-197030205
Length
186 bp
Sequences
Splice sites
3' ss Seq
AATAATTTTTTTTCCCATAGAAA
3' ss Score
9.24
5' ss Seq
ATGGTATAA
5' ss Score
2.05
Exon sequences
Seq C1 exon
AGAAACCCTGTGGTTTTCCTCATGTGGAAAATGGAAGAATTGCCCAATATTACTATACTTTTAAAAGCTTTTACTTTCCAATGAGCATAGACAAAAAATTGTCATTTTTCTGCTTGGCTGGTTATACCACTGAAAGTGGAAGACAAGAAGAGCAAACCACGTGTACAACAGAAGGCTGGTCTCCAGAGCCAAGGTGCTTCA
Seq A exon
AAAAATGCACTAAGCCTGACCTGAGTAATGGTTACATCTCTGATGTAAAGTTATTGTATAAAATTCAAGAGAACATGCGTTATGGTTGCGCTTCAGGGTACAAAACCACTGGAGGGAAGGATGAAGAAGTGGTTCAATGTCTCTCTGATGGATGGTCTTCTCAACCAACCTGTAGGAAAGAACATG
Seq C2 exon
AAACATGTTTGGCTCCTGAATTATATAATGGAAATTATTCCACAACACAGAAAACATTCAAAGTGAAGGACAAAGTACAATACGAATGTGCTACTGGCTACTACACAGCTGGAGGAAAGAAGACAGAGGAGGTAGAATGTCTCACATACGGATGGTCTCTCACACCAAAATGTACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143278-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.059 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=92.6)
A:
PF0008415=Sushi=WD(100=88.9)
C2:
PF0008415=Sushi=WD(100=93.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTGGCTGGTTATACCACTGA
R:
TTGGTGTGAGAGACCATCCGT
Band lengths:
258-444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)