Special

MmuEX0017723 @ mm9

Exon Skipping

Gene
ENSMUSG00000026368 | F13b
Description
coagulation factor XIII, beta subunit [Source:MGI Symbol;Acc:MGI:88379]
Coordinates
chr1:141400338-141404326:+
Coord C1 exon
chr1:141400338-141400538
Coord A exon
chr1:141403343-141403528
Coord C2 exon
chr1:141404150-141404326
Length
186 bp
Sequences
Splice sites
3' ss Seq
CATTTACCTTTACAATACAGAGA
3' ss Score
3.99
5' ss Seq
AAGGTACAC
5' ss Score
7.56
Exon sequences
Seq C1 exon
AGAAACAGTGTGATTTTCCTACCGTGGAAAATGGAAGGATTGCCCAATATTATTATACGTTTAAAAGCTTTTACTTCCCCATGAGCGTAGACAAAAAACTATCATTCTTCTGTTTGGCTGGCTATGCAACCGAAAGTGGGAAGCAAGAAGAGCAAATCAGGTGCACAGCAGAAGGCTGGTCTCCAAACCCAAGGTGCTACA
Seq A exon
AGAAATGTCTGAAGCCTGACCTAAGGAATGGCTACGTCTCCAATGACAAAGTACTGTACAAACTTCAAGAGAGGATGAGCTACGGTTGCTCTTCAGGATACAAAACCACTGGGGGAAAGGACGAGGAGGTGGTCCACTGTCTTTCTGCAGGGTGGTCTTCTCAACCGTCCTGCAGGAAAGAACAAG
Seq C2 exon
AGACATGTTTGGCCCCTGAGTTGGAACATGGAAATTACTCCACGACGCAGAGAACATTCAAAGTGAAGGACATAGTGGCTTACACATGCACTGCAGGCTACTACACCACTACAGGGAAGCAGACTGGGGAAGCAGAGTGCCAGGCTAATGGCTGGTCCCTCACACCACAGTGCAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026368_MULTIEX1-1/4=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
Alternative protein isoforms (Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0008415=Sushi=WD(100=92.6)

							
A:
PF0008415=Sushi=WD(100=88.9)

							
C2:
PF0008415=Sushi=WD(100=93.3)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000027615





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr1:197061784-197061873 
HsaEX6035742
(F13B)
Human
(hg19)
chr1:197030914-197031099 
HIGH PSI
HsaEX6035742
(F13B)
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr16:77852741-77852926 
HIGH PSI
BtaEX6070859
(F13B)
Chicken
(galGal4)
chr8:2633438-2633623 
HIGH PSI
GgaEX1023545
(F13B)
Chicken
(galGal3)
chr8:2659729-2659914 
HIGH PSI
GgaEX1023545
(F13B)
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
ACTTCCCCATGAGCGTAGACA

				
R: 
CCCAGTCTGCTTCCCTGTAGT

				
Band lengths: 
257-443

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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