RnoEX0033759 @ rn6
Exon Skipping
Gene
ENSRNOG00000012613 | F13b
Description
coagulation factor XIII B chain [Source:RGD Symbol;Acc:1311668]
Coordinates
chr13:56601649-56604460:+
Coord C1 exon
chr13:56601649-56601849
Coord A exon
chr13:56603614-56603703
Coord C2 exon
chr13:56604284-56604460
Length
90 bp
Sequences
Splice sites
3' ss Seq
GCGTTACGGTTGCACTTCAGGAT
3' ss Score
6.68
5' ss Seq
AAGGTACAC
5' ss Score
7.56
Exon sequences
Seq C1 exon
AGAAACAGTGTGATTTTCCTGCCGTGGAAAATGGAAGAATTGCCCAATATTATTATACGTTTAAAAGCTATTACTTCCCCATGAGCATAGACAAAAAACTATCATTCTTCTGTTTGGCTGGCTATGCAACCGAAAGTGGGAAGCAAGAAGAGAAAATCAGGTGTACAGCGGAAGGCTGGTCTCCAAAACCAAGGTGCTACA
Seq A exon
GATACAAAACGACTGGGGGAAAGGATGAAGAAGTGGTCCAGTGTCTTTCTGAAGGGTGGTCTTCTCAACCGTCCTGCAGGAAAGAACAAG
Seq C2 exon
AGACATGTTTGGCCCCTGAGTTGCATCATGGGAATTATTCCACGATACAGAGGACATTCAAAGTGAAGGACAGAGTGCAGTACACATGCACTGCAGGCTACTACACCGCCACAGGGAAGCAGACTGAGGAAGTGGAGTGCCAGGCTCATGGCTGGTCCTTCACGCCACAGTGCAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012613-'4-5,'4-4,5-5
Average complexity
S*
Mappability confidence:
88%=100=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=92.6)
A:
PF0008415=Sushi=WD(100=88.9)
C2:
PF0008415=Sushi=WD(100=93.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTATGCAACCGAAAGTGGGA
R:
TAGCCTGCAGTGCATGTGTAC
Band lengths:
181-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]