HsaEX6037021 @ hg19
Exon Skipping
Gene
ENSG00000185842 | DNAH14
Description
dynein, axonemal, heavy chain 14 [Source:HGNC Symbol;Acc:2945]
Coordinates
chr1:225339585-225341528:+
Coord C1 exon
chr1:225339585-225339775
Coord A exon
chr1:225340399-225340585
Coord C2 exon
chr1:225341452-225341528
Length
187 bp
Sequences
Splice sites
3' ss Seq
GTTTTTCTTTTCCTCTTCAGATA
3' ss Score
11.7
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
TGTGCTCTGTTTGCATTTAAATGTAACACAGCCTTAATAAAGCTTCCAAACTCACTTATAGTTTTAACATGCTTTGGACTAGAGAAAACAGTGCTAGTGATGAATACTGTAATGTCTTTTAGGTTTGTACTGGAAGGAAAAGAAATTCGTATCAATATGTCTTGTGCGGTATTTATCACCATGAATCCCAG
Seq A exon
ATACGGAGGTGGAGTAGAGCTCCCAGATAACTTAAAATCTCTGTTTCGCCCAGTGGCAATGATGGTGCCCCATTATCAAATGATTGCTGAAATAATATTGTTTTCATTTGGTTTCAAATCTGCAAATTCACTCTCTGGAAAGCTAACTAACCTTTATGAATTAGCGCGCAAACAGCTCTCACAACAG
Seq C2 exon
GATCATTATAATTTTGGCTTGAGATCTCTGAAGATAGTTTTAATAATGGCTGGAACGAAGAAACGGGAGTTTAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185842-'51-57,'51-56,52-57=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PD(19.1=20.3),PF127742=AAA_6=PU(29.6=57.8)
A:
PF127742=AAA_6=FE(26.6=100)
C2:
PF127742=AAA_6=PD(10.0=88.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGCTCTGTTTGCATTTAAATGT
R:
CCGTTTCTTCGTTCCAGCCAT
Band lengths:
257-444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)