RnoEX0001842 @ rn6
Exon Skipping
Gene
ENSRNOG00000048741 | AABR07021946.1
Description
NA
Coordinates
chr13:99970290-99975856:+
Coord C1 exon
chr13:99970290-99970390
Coord A exon
chr13:99974523-99974709
Coord C2 exon
chr13:99975756-99975856
Length
187 bp
Sequences
Splice sites
3' ss Seq
GTTTCCCTTTTCCTCTTTAGGTA
3' ss Score
12.56
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GACCTTAGTGATGGATGCCTCACTGCCTTTAGGTTCCTGCTGGATGGTAGAGAAGTACGGATCAATATGTCATGCGCGGTGCTGATCACCTTAAATCCTGG
Seq A exon
GTATAGAGGTCGGGTTGAGCTCCCAAGCAACTTAAAATCCCTGTTTCGCTCAGTGGCCATGATGGTGCCCCACTACAAAATGATCACTGAAGTAACTCTGTTTTCATTTGGCTTCAAATCTTCAAAATCTCTGTCTGGAAAGATAGTTAGCCTTTATGATTTAGCTGACAAGCAGCTCTCAAAACAG
Seq C2 exon
GAGCACTATGATTTTGGCATGAGGACCTTGAAGACAGTTTTAATAATGACAGAAAAGAAGAAACTGGAGCATAAATGGTCAGTTGAATTTTGAATTTAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000048741-'10-12,'10-11,11-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTTAGTGATGGATGCCTCAC
R:
CACTAAATTCAAAATTCAACTGACCA
Band lengths:
202-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]