MmuEX0014968 @ mm9
Exon Skipping
Gene
ENSMUSG00000047369 | Dnahc14
Description
dynein, axonemal, heavy chain 14 [Source:MGI Symbol;Acc:MGI:2444525]
Coordinates
chr1:183587126-183596199:+
Coord C1 exon
chr1:183587126-183587194
Coord A exon
chr1:183594907-183595093
Coord C2 exon
chr1:183596123-183596199
Length
187 bp
Sequences
Splice sites
3' ss Seq
GTTTTCCTTTTCCTCTTTAGAAC
3' ss Score
11.27
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GTTCGTACTGGATGGTAGAGAAATACGGATCAATATGTCGTGTGCAGTGCTTATCACCATCAATCCTGG
Seq A exon
AACTACAGGTCGGGTTGAAATCCCAGATAACTTAAAATATCTGTTCCGCTTAGTGTCGATAATGGTGCCCCACTATAAAATGATCACTGAAGTAATTCTGTTTTCATATGGCTTCAAATCTTCACGATCACTGTCTGGAAAGATAGTTCACCTTTATGATTTAGCTGACAAGCAGCTCTCAAAACAG
Seq C2 exon
GAACATTATGATTTTGGCTTGAGGACCTTGAAGACAGTTCTAATAATGACAGAAAAGAAGATACTGGAGCATAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047369-'25-29,'25-28,26-29
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCGTACTGGATGGTAGAGAA
R:
TGCTCCAGTATCTTCTTTTCTGTCA
Band lengths:
140-327
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: