HsaEX6041886 @ hg19
Exon Skipping
Gene
ENSG00000162068 | NTN3
Description
netrin 3 [Source:HGNC Symbol;Acc:8030]
Coordinates
chr16:2522986-2523504:+
Coord C1 exon
chr16:2522986-2523135
Coord A exon
chr16:2523269-2523319
Coord C2 exon
chr16:2523430-2523504
Length
51 bp
Sequences
Splice sites
3' ss Seq
TTCTCCCTCCCTCTCTGCAGAGA
3' ss Score
11.75
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
CCTGCGACTGTCACCCGGTTGGTGCTGCTGGCAAGACCTGCAACCAGACCACAGGCCAGTGTCCCTGCAAGGATGGCGTCACTGGCCTCACCTGCAACCGCTGCGCGCCTGGCTTCCAGCAAAGCCGCTCCCCAGTGGCGCCCTGTGTTA
Seq A exon
AGACCCCTATCCCTGGACCCACTGAGGACAGCAGCCCTGTGCAGCCCCAGG
Seq C2 exon
ACTGTGACTCGCACTGCAAACCTGCCCGTGGCAGCTACCGCATCAGCCTAAAGAAGTTCTGCAAGAAGGACTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162068-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.039 A=0.611 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=WD(100=94.1)
A:
NO
C2:
PF0175916=NTR=PU(7.0=30.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGACCTGCAACCAGACCAC
R:
CAGGTTTGCAGTGCGAGTCA
Band lengths:
143-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)