DreEX6096445 @ danRer10
Exon Skipping
Gene
ENSDARG00000076748 | ntn2
Description
netrin 2 [Source:ZFIN;Acc:ZDB-GENE-050310-2]
Coordinates
chr24:38842010-38845699:-
Coord C1 exon
chr24:38845550-38845699
Coord A exon
chr24:38843980-38844033
Coord C2 exon
chr24:38842010-38842084
Length
54 bp
Sequences
Splice sites
3' ss Seq
CACTGTCCTGTGTCTTTCAGAAA
3' ss Score
10.63
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
CATGTGACTGCCATCCGGTGGGAGCTGCAGGTAAGACGTGTAACCAGACGACGGGTCAGTGCCCGTGTAAAGACGGAGTGACCGGCATCACCTGTAACCGCTGTGCTAAAGGCTATCAGCAGAGTCGATCGCCCGTCGCCCCGTGCATCA
Seq A exon
AAATCCCGGTTATCAAGCCAACGGCTGTGATCAGCACTACAGAGGAGCCTGCAG
Seq C2 exon
ATTGTGACTCTTACTGTAAACCACTGAAGGGAAATCTCAAGATAAACATGAAGAAATACTGCAAAAAGGACTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076748-'8-10,'8-9,9-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=WD(100=94.1)
A:
NO
C2:
PF0175916=NTR=PU(7.3=30.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCAGTGCCCGTGTAAAGAC
R:
TCTTGAGATTTCCCTTCAGTGGT
Band lengths:
139-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]