RnoEX6002742 @ rn6
Exon Skipping
Gene
ENSRNOG00000021016 | Ntn5
Description
netrin 5 [Source:RGD Symbol;Acc:1565197]
Coordinates
chr1:101674560-101675554:+
Coord C1 exon
chr1:101674560-101674709
Coord A exon
chr1:101675030-101675083
Coord C2 exon
chr1:101675474-101675554
Length
54 bp
Sequences
Splice sites
3' ss Seq
TTTCTCCTCTCCTCTGACAGGAA
3' ss Score
11.7
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
CCTGCCAGTGTCACCCAATTGGAGCAACAGGAGGGATGTGCAACCAGACCAGTGGCCAGTGCTCCTGCAAGTTAGGGGTCACGGGCCTGACATGCAATCACTGTGGTCCTGGGTACCAGCAGAGCCGCTCACCCAGGATGCCCTGTCAAC
Seq A exon
GAATTCCAGAAGCAACAACTGCCCTTGCTACTACTCCTGTTGCATCGCGATCAG
Seq C2 exon
ACCCACAGTGTCAAGGCTACTGCAATGTCTCCGTCAGCAGTGTGCACATGAACCTTCAGAAGTACTGTCAGCAGGACTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021016-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.039 A=0.158 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=WD(100=96.1)
A:
NO
C2:
PF0175916=NTR=PU(6.6=28.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGTGCAACCAGACCAGTGG
R:
AGTAGCCTTGACACTGTGGGT
Band lengths:
137-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]