HsaEX6095983 @ hg19
Exon Skipping
Gene
ENSG00000142233 | NTN5
Description
netrin 5 [Source:HGNC Symbol;Acc:25208]
Coordinates
chr19:49166720-49167549:-
Coord C1 exon
chr19:49167400-49167549
Coord A exon
chr19:49167018-49167071
Coord C2 exon
chr19:49166720-49166800
Length
54 bp
Sequences
Splice sites
3' ss Seq
TTTCTCCTTTGGTCTCACAGGAA
3' ss Score
11.17
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
CCTGCCAGTGCCACCCTATTGGGGCAACAGGAGGAACCTGCAACCAGACCAGTGGGCAGTGCACCTGCAAGTTAGGGGTCACAGGCCTGACCTGCAACCGCTGTGGCCCTGGCTACCAGCAGAGCCGCTCCCCCAGGATGCCCTGCCAGC
Seq A exon
GAATTCCAGAGGCAACAACCACCCTTGCCACTACTCCTGGTGCTTATAGCTCTG
Seq C2 exon
ACCCTCAGTGTCAAAACTACTGCAATATGTCGGACACCAGGGTACACATGAGCCTTCGGAGGTACTGCCAGCAGGACCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000142233-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.088 A=0.333 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=WD(100=96.1)
A:
NO
C2:
PF0175916=NTR=PU(23.5=28.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTGCAAGTTAGGGGTCAC
R:
AAGGCTCATGTGTACCCTGGT
Band lengths:
145-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)