MmuEX0032527 @ mm10
Exon Skipping
Gene
ENSMUSG00000070564 | Ntn5
Description
netrin 5 [Source:MGI Symbol;Acc:MGI:2685330]
Coordinates
chr7:45691412-45692421:+
Coord C1 exon
chr7:45691412-45691561
Coord A exon
chr7:45691884-45691937
Coord C2 exon
chr7:45692341-45692421
Length
54 bp
Sequences
Splice sites
3' ss Seq
TTTCTCCTCTGGTCTGACAGGAA
3' ss Score
10.02
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
CCTGCCAGTGCCACCCAATTGGAGCAACGGGAGGGATGTGCAACCAGACCAGTGGCCAGTGCTCCTGCAAGTTAGGGGTCACAGGCCTGACATGCAATCGCTGTGGTCCTGGCTACCAGCAGAGCCGCTCACCCAGGATGCCCTGCCAAC
Seq A exon
GAATTCCAGAGGCAACAACTACCCCTGCTACTACCCCTGTTGCATCTCGATCAG
Seq C2 exon
ACCCACAGTGTCAAGGCTATTGCAATGTCTCCGTCAGCAGTGTGCACATGAGCCTTCAGAGATACTGTCAGCAGGATTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070564-'6-9,'6-6,13-9=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.111 A=0.702 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=WD(100=96.1)
A:
NO
C2:
PF0175916=NTR=PU(6.8=28.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGCAAGTTAGGGGTCACA
R:
CTGAAGGCTCATGTGCACACT
Band lengths:
147-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types