GgaEX6013192 @ galGal3
Exon Skipping
Gene
ENSGALG00000009208 | NET3_CHICK
Description
NA
Coordinates
chr14:14766468-14771136:-
Coord C1 exon
chr14:14770987-14771136
Coord A exon
chr14:14770592-14770645
Coord C2 exon
chr14:14766468-14766542
Length
54 bp
Sequences
Splice sites
3' ss Seq
TTTCCCCCTTTCTCTTCCAGAGA
3' ss Score
12.97
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
CCTGTGACTGCCACCCAGTTGGTGCTGCTGGCAAGACCTGCAACCAAACAACAGGGCAGTGCCCGTGCAAGGACGGCGTGACCGGCCTCACCTGCAACCGCTGCGCCAAGGGCTTCCAGCAGAGCCGCTCGCCTGTGGCCCCCTGCATCA
Seq A exon
AGATCCCTGCCATCAACCCGACCTCTCTTGTCACCAGCACGGAGGCACCTGCAG
Seq C2 exon
ACTGTGACTCCTACTGCAAGCCAGCCAAAGGCAACTACAAGATTAACATGAAGAAGTACTGCAAGAAGGATTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009208-'2-5,'2-2,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=WD(100=94.1)
A:
NO
C2:
PF0175916=NTR=PU(7.5=30.8)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACCAAACAACAGGGCAGTG
R:
GGCTTGCAGTAGGAGTCACAG
Band lengths:
132-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]