HsaEX0044059 @ hg19
Exon Skipping
Gene
ENSG00000065320 | NTN1
Description
netrin 1 [Source:HGNC Symbol;Acc:8029]
Coordinates
chr17:9083124-9124559:+
Coord C1 exon
chr17:9083124-9083273
Coord A exon
chr17:9086233-9086286
Coord C2 exon
chr17:9124485-9124559
Length
54 bp
Sequences
Splice sites
3' ss Seq
CCGTCTTGAACCTCACAAAGAGA
3' ss Score
-0.73
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
CCTGTGATTGCCACCCTGTGGGTGCTGCTGGCAAAACCTGCAACCAAACCACCGGCCAGTGTCCCTGCAAGGACGGCGTGACGGGTATCACCTGCAACCGCTGCGCCAAAGGCTACCAGCAGAGCCGCTCTCCCATCGCCCCCTGCATAA
Seq A exon
AGATCCCTGTAGCGCCGCCGACGACTGCAGCCAGCAGCGTGGAGGAGCCTGAAG
Seq C2 exon
ACTGCGATTCCTACTGCAAGGCCTCCAAGGGGAAGCTGAAGATTAACATGAAAAAGTACTGCAAGAAGGACTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000065320-'4-6,'4-4,5-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.263 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=WD(100=94.1)
A:
NO
C2:
PF0175916=NTR=PU(7.5=30.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAACCTGCAACCAAACCACC
R:
TGGAGGCCTTGCAGTAGGAAT
Band lengths:
145-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)