GgaEX1040598 @ galGal4
Exon Skipping
Gene
ENSGALG00000023626 | NTN1
Description
Netrin-1 [Source:UniProtKB/Swiss-Prot;Acc:Q90922]
Coordinates
chr18:2061172-2064575:+
Coord C1 exon
chr18:2061172-2061321
Coord A exon
chr18:2061909-2061962
Coord C2 exon
chr18:2064501-2064575
Length
54 bp
Sequences
Splice sites
3' ss Seq
TGTCCCCTCTTGTCCCGCAGAGA
3' ss Score
12.81
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
AGTGCGATTGCCATCCCGTGGGCGCCGCCGGCCAAACCTGCAACCAAACCACGGGGCAGTGTCCATGCAAGGACGGCGTCACCGGCATCACCTGCAACCGCTGTGCCAAGGGCTACCAGCAGAGCCGCTCGCCCATCGCGCCCTGCATAA
Seq A exon
AGATCCCCGCTGCGCCGCCCCCCACAGCTGCCAGCAGCACGGAGGAGCCCGCAG
Seq C2 exon
ACTGTGACTCGTACTGCAAAGCCTCCAAGGGGAAGCTGAAGATCAACATGAAGAAGTACTGCAAGAAGGACTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023626-'5-4,'5-3,6-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=WD(100=94.1)
A:
NO
C2:
PF0175916=NTR=PU(7.5=30.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAACCTGCAACCAAACCACG
R:
GGAGGCTTTGCAGTACGAGTC
Band lengths:
144-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]