DreEX0051896 @ danRer10
Exon Skipping
Gene
ENSDARG00000105112 | ntn1a
Description
netrin 1a [Source:ZFIN;Acc:ZDB-GENE-990415-169]
Coordinates
chr6:23344479-23375036:-
Coord C1 exon
chr6:23374848-23375036
Coord A exon
chr6:23355118-23355171
Coord C2 exon
chr6:23344479-23344553
Length
54 bp
Sequences
Splice sites
3' ss Seq
TGCATTCTTTTTCGCAACAGAAA
3' ss Score
7.68
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
CCTGCAATTGTAACCTTCATGCGAGGCGCTGTCGTTTCAACATGGAGCTTTACAAACTCTCTGGAAGGAAAAGTGGAGGAGTCTGTCTGAACTGCCGCCACAATACAGCTGGTCGCCACTGCCACTACTGCAAAGAGGGCTACTATAGAGACATGTCCAAGCCCATCTCCCACAGAAAGGCCTGCAAAG
Seq A exon
AAATTCCCATCGCTCCGCCAACCACCACTGCAAGCAGCACAGAAGAGCCATCAG
Seq C2 exon
ACTGTGAATCCTACTGCAAGGCATCCAAAGGCAAGCTGAAGATCAATATGAAGAAGTACTGCAAGAAAGATTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000105112_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=0.140 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=WD(100=95.3)
A:
NO
C2:
PF0175916=NTR=PU(7.5=30.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGAACTGCCGCCACAATAC
R:
GCCTTTGGATGCCTTGCAGTA
Band lengths:
136-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]