GgaEX1040598 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr18:2036353-2040448:+
Coord C1 exon
chr18:2036353-2036502
Coord A exon
chr18:2037090-2037143
Coord C2 exon
chr18:2040375-2040448
Length
54 bp
Sequences
Splice sites
3' ss Seq
TGTCCCCTCTTGTCCCGCAGAGA
3' ss Score
12.81
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
AGTGCGATTGCCATCCCGTGGGCGCCGCCGGCCAAACCTGCAACCAAACCACGGGGCAGTGTCCATGCAAGGACGGCGTCACCGGCATCACCTGCAACCGCTGTGCCAAGGGCTACCAGCAGAGCCGCTCGCCCATCGCGCCCTGCATAA
Seq A exon
AGATCCCCGCTGCGCCGCCCCCCACAGCTGCCAGCAGCACGGAGGAGCCCGCAG
Seq C2 exon
ACTGTGACTCGTACTGCAAAGCCTCCAAGGGGAAGCTGAAGATCAACATGAAGAAGTACTGCAAGAAGGACTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023626-'1-3,'1-2,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=WD(100=94.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAACCTGCAACCAAACCACG
R:
GGAGGCTTTGCAGTACGAGTC
Band lengths:
144-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]