DreEX0051898 @ danRer10
Exon Skipping
Gene
ENSDARG00000022531 | ntn1b
Description
netrin 1b [Source:ZFIN;Acc:ZDB-GENE-990415-168]
Coordinates
chr3:25600310-25625750:-
Coord C1 exon
chr3:25625601-25625750
Coord A exon
chr3:25608466-25608519
Coord C2 exon
chr3:25600310-25600384
Length
54 bp
Sequences
Splice sites
3' ss Seq
TTCTTGACTGTTTGTTACAGAAA
3' ss Score
7.85
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
CCTGCGATTGTCATCCTGTTGGTGCAGCTGGTAAGACCTGTAACCAGACAACTGGACAGTGTCCATGTAAAGATGGTGTGACTGGCATCACCTGTAATCGCTGTGCTAAAGGATACCAGCAGAGCAGATCACCCATCGCCCCCTGTATCA
Seq A exon
AAATTCCAGTTGCTGCTCCCACATCATCATACAGCAGCCCAGACGGGCCCACAG
Seq C2 exon
ATTGCGACTCGCACTGCAAAGCACCCAAGGGCAAGATGAAGGTCACCATGAAAAAATACTGCAAGAAAGATTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000022531-'3-6,'3-5,4-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=WD(100=94.1)
A:
NO
C2:
PF0175916=NTR=PU(7.3=30.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTAAAGATGGTGTGACTGGCA
R:
TGGTGACCTTCATCTTGCCCT
Band lengths:
133-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]