HsaEX0044059 @ hg38
Exon Skipping
Gene
ENSG00000065320 | NTN1
Description
netrin 1 [Source:HGNC Symbol;Acc:HGNC:8029]
Coordinates
chr17:9179807-9221242:+
Coord C1 exon
chr17:9179807-9179956
Coord A exon
chr17:9182916-9182969
Coord C2 exon
chr17:9221168-9221242
Length
54 bp
Sequences
Splice sites
3' ss Seq
CCGTCTTGAACCTCACAAAGAGA
3' ss Score
-0.73
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
CCTGTGATTGCCACCCTGTGGGTGCTGCTGGCAAAACCTGCAACCAAACCACCGGCCAGTGTCCCTGCAAGGACGGCGTGACGGGTATCACCTGCAACCGCTGCGCCAAAGGCTACCAGCAGAGCCGCTCTCCCATCGCCCCCTGCATAA
Seq A exon
AGATCCCTGTAGCGCCGCCGACGACTGCAGCCAGCAGCGTGGAGGAGCCTGAAG
Seq C2 exon
ACTGCGATTCCTACTGCAAGGCCTCCAAGGGGAAGCTGAAGATTAACATGAAAAAGTACTGCAAGAAGGACTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000065320-'13-18,'13-11,14-18
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.175 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=WD(100=94.1)
A:
NO
C2:
PF0175916=NTR=PU(7.5=30.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAACCTGCAACCAAACCACC
R:
TGGAGGCCTTGCAGTAGGAAT
Band lengths:
145-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development