MmuEX0032521 @ mm10
Exon Skipping
Gene
ENSMUSG00000020902 | Ntn1
Description
netrin 1 [Source:MGI Symbol;Acc:MGI:105088]
Coordinates
chr11:68226536-68260646:-
Coord C1 exon
chr11:68260497-68260646
Coord A exon
chr11:68257455-68257508
Coord C2 exon
chr11:68226536-68226610
Length
54 bp
Sequences
Splice sites
3' ss Seq
CTTTTCTGAACCTCATGAAGAGA
3' ss Score
1.51
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
CCTGTGATTGCCACCCAGTGGGTGCTGCTGGCAAGACCTGCAATCAAACCACTGGCCAATGTCCCTGCAAGGACGGCGTGACGGGCATCACCTGCAACCGATGTGCCAAAGGCTACCAGCAGAGCCGCTCCCCCATCGCCCCTTGCATCA
Seq A exon
AGATTCCTGTGGCGCCACCCACCACTGCAGCCAGCAGCGTGGAGGAACCGGAAG
Seq C2 exon
ACTGTGACTCCTATTGCAAGGCCTCCAAAGGCAAGCTGAAGATGAACATGAAGAAATACTGCAGGAAGGACTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020902_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=WD(100=94.1)
A:
NO
C2:
PF0175916=NTR=PU(7.5=30.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAACCACTGGCCAATGTCC
R:
TGGAGGCCTTGCAATAGGAGT
Band lengths:
134-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types