BtaEX6087086 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012137 | NTN1
Description
netrin 1 [Source:HGNC Symbol;Acc:HGNC:8029]
Coordinates
chr19:29216482-29254545:+
Coord C1 exon
chr19:29216482-29216631
Coord A exon
chr19:29219728-29219781
Coord C2 exon
chr19:29254471-29254545
Length
54 bp
Sequences
Splice sites
3' ss Seq
CCACCCTGAACCCCACAAAGAGA
3' ss Score
-0.94
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
CCTGCGATTGCCACCCCGTGGGCGCTGCTGGCAAGACCTGCAACCAGACCACAGGCCAGTGTCCCTGCAAGGACGGCGTGACCGGCATCACCTGCAACCGCTGCGCCAAGGGCTACCAGCAGAGCCGCTCGCCCATCGCCCCCTGCATAA
Seq A exon
AGATCCCTGTGGCACCGCCAACCACTGCAGCCAGCAGCGTGGAGGAGCCCGAAG
Seq C2 exon
ACTGTGATTCCTACTGCAAGGCCTCCAAAGGGAAGCTGAAGATTAACATGAAAAAATACTGCAAGAAGGACTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012137-'2-4,'2-3,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=WD(100=94.1)
A:
NO
C2:
PF0175916=NTR=PU(7.5=30.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGACCTGCAACCAGACCAC
R:
TGGAGGCCTTGCAGTAGGAAT
Band lengths:
146-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]