RnoEX6047816 @ rn6
Exon Skipping
Gene
ENSRNOG00000003947 | Ntn1
Description
netrin 1 [Source:RGD Symbol;Acc:619809]
Coordinates
chr10:54775822-54810483:-
Coord C1 exon
chr10:54810334-54810483
Coord A exon
chr10:54806572-54806625
Coord C2 exon
chr10:54775822-54775896
Length
54 bp
Sequences
Splice sites
3' ss Seq
CTTTTCTGAACCTCATGAAGAGA
3' ss Score
1.51
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
CCTGTGATTGCCACCCTGTGGGTGCTGCTGGTAAGACCTGCAATCAAACCACCGGCCAGTGTCCCTGCAAGGACGGCGTGACAGGCATCACCTGCAACCGCTGTGCCAAAGGCTACCAGCAGAGCCGCTCCCCCATCGCCCCTTGCATTA
Seq A exon
AGATTCCTGTAGCGCCACCCACCACTGCAGCCAGCAGCATGGAAGAACCTGAAG
Seq C2 exon
ACTGTGACTCCTACTGCAAGGCTTCCAAAGGAAAACTGAAGATGAACATGAAGAAATACTGCAGGAAGGACTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003947-'13-8,'13-7,14-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=WD(100=94.1)
A:
NO
C2:
PF0175916=NTR=PU(7.5=30.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACCTGCAATCAAACCACCG
R:
AGCCTTGCAGTAGGAGTCACA
Band lengths:
140-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]