BtaEX0025059 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000045625 | NTN3
Description
Bos taurus netrin 3 (NTN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001206905]
Coordinates
chr25:1978620-1979197:+
Coord C1 exon
chr25:1978620-1978769
Coord A exon
chr25:1978937-1978987
Coord C2 exon
chr25:1979123-1979197
Length
51 bp
Sequences
Splice sites
3' ss Seq
TCATCCTATCCTCCCCACAGAGA
3' ss Score
10.84
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
Exon sequences
Seq C1 exon
CCTGTGACTGTCACCCTGTTGGTGCTGCTGGCAAAACCTGCAACCAGACCACCGGCCAGTGTCCCTGCAAGGATGGCGTCACTGGCCTCACCTGCAACCGCTGTGCCCCTGGCTTCCAGCAGAGCCGCTCTCCGGTGGCACCTTGCGTTA
Seq A exon
AGACCCCTGTCCCTGGACCCACTGAGGAGAGCAGTCCTGTGGCGCCCCAGG
Seq C2 exon
ACTGCGACTTGCACTGCAAACCCGCTCGTGGCAGCTACCGCATCAGCCTGAAGAAGTTCTGCAGGAAGGACTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000045625-'2-3,'2-2,3-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.039 A=0.500 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=WD(100=94.1)
A:
NO
C2:
PF0175916=NTR=PU(7.0=30.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAAGGATGGCGTCACTG
R:
AACTTCTTCAGGCTGATGCGG
Band lengths:
144-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development