RnoEX6046361 @ rn6
Exon Skipping
Gene
ENSRNOG00000006970 | Ntn3
Description
netrin 3 [Source:RGD Symbol;Acc:619811]
Coordinates
chr10:13578484-13578999:-
Coord C1 exon
chr10:13578850-13578999
Coord A exon
chr10:13578675-13578725
Coord C2 exon
chr10:13578484-13578558
Length
51 bp
Sequences
Splice sites
3' ss Seq
TGTTCTCCCACATTCCTTAGAGA
3' ss Score
8.28
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
CTTGTGACTGCCACCCAGTTGGTGCTGCTGGCAAAACCTGTAACCAGACCACAGGCCAGTGTCCCTGTAAGGATGGTGTTACCGGCCTCACCTGTAACCGCTGCGCCCCAGGTTTCCAGCAGAGCCGTTCTCCTGTCGCACCTTGTGTTA
Seq A exon
AGACTCCTGTCCCTGGACCCACTGAAGAAAGCAGTCCTGTGGAGCCACAGG
Seq C2 exon
ACTGTGAGTCACATTGCAGACCTGCGCGTGGCAGTTACCGAATCAGCCTGAAGAAGTTCTGCCGAAAGGACTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006970-'6-5,'6-3,7-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.039 A=0.667 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=WD(100=94.1)
A:
NO
C2:
PF0175916=NTR=PU(7.0=30.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTACCGGCCTCACCTGTAA
R:
TTCGGCAGAACTTCTTCAGGC
Band lengths:
140-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]