BtaEX6083335 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000044132 | NTN5
Description
netrin 5 [Source:HGNC Symbol;Acc:HGNC:25208]
Coordinates
chr18:55747915-55748815:-
Coord C1 exon
chr18:55748666-55748815
Coord A exon
chr18:55748199-55748252
Coord C2 exon
chr18:55747915-55747995
Length
54 bp
Sequences
Splice sites
3' ss Seq
TCTTCTCTGCTCTCTCACAGGAA
3' ss Score
11.46
5' ss Seq
CGGGTAAGA
5' ss Score
9.84
Exon sequences
Seq C1 exon
CCTGCCAGTGCCATCCAATTGGGGCGACAGGCGGTGCCTGCAACCAGACCAATGGGCAGTGCTCCTGCAAGTTAGGGGTCACTGGCCTGACCTGCAACCGCTGTGGTCCCGGCTACCAGCAGAGCCGCTCCCCCAGGATGCCCTGCCAGC
Seq A exon
GAATCCTAGAGGCGACAACCACCCTTGCTACAACCCCTCATGCTTACAGCTCGG
Seq C2 exon
ACCCTCAGTGTCAAAACTATTGCAATACTTCGGACACCAGGATACACATGAGCCTTCAGAGGTACTGCCAACAGGACTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000044132-'4-6,'4-5,7-6=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.053 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=WD(100=96.1)
A:
NO
C2:
PF0175916=NTR=PU(7.4=28.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGCAAGTTAGGGGTCACT
R:
TGTGTATCCTGGTGTCCGAAGT
Band lengths:
136-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]