HsaEX6042609 @ hg19
Exon Skipping
Gene
ENSG00000166743 | ACSM1
Description
acyl-CoA synthetase medium-chain family member 1 [Source:HGNC Symbol;Acc:18049]
Coordinates
chr16:20636745-20648176:-
Coord C1 exon
chr16:20648061-20648176
Coord A exon
chr16:20638511-20638638
Coord C2 exon
chr16:20636745-20636844
Length
128 bp
Sequences
Splice sites
3' ss Seq
GAGCTCTCTTCTTTTTGCAGGGT
3' ss Score
9.21
5' ss Seq
TGGGTAGGT
5' ss Score
6.86
Exon sequences
Seq C1 exon
GCCTCTTGCTACAGGTCATTGATGACAAGGGCAGCATCCTGCCACCTAACACAGAAGGAAACATTGGCATCAGAATCAAACCTGTCAGGCCTGTGAGCCTCTTCATGTGCTATGAG
Seq A exon
GGTGACCCAGAGAAGACAGCTAAAGTGGAATGTGGGGACTTCTACAACACTGGGGACAGAGGTAAGATGGATGAAGAGGGCTACATTTGTTTCCTGGGGAGGAGTGATGACATCATTAATGCCTCTGG
Seq C2 exon
GTATCGCATCGGGCCTGCAGAGGTTGAAAGCGCTTTGGTGGAGCACCCAGCGGTGGCGGAGTCAGCCGTGGTGGGCAGCCCAGACCCGATTCGAGGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166743-'14-20,'14-19,16-20=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=0.087 C2=0.081
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(36.2=100)
A:
PF0050123=AMP-binding=PD(0.1=0.0),PF0050123=AMP-binding=PD(91.3=95.5)
C2:
PF131931=AMP-binding_C=PU(32.1=76.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCTTGCTACAGGTCATTGA
R:
CTCCCCTCGAATCGGGTCTG
Band lengths:
216-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)