BtaEX6108957 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001417 | ACSM1
Description
acyl-CoA synthetase medium-chain family member 1 [Source:HGNC Symbol;Acc:HGNC:18049]
Coordinates
chr25:18407052-18411035:+
Coord C1 exon
chr25:18407052-18407153
Coord A exon
chr25:18409891-18410018
Coord C2 exon
chr25:18410936-18411035
Length
128 bp
Sequences
Splice sites
3' ss Seq
GAGTGCTGTTCTCTTTGCAGAAT
3' ss Score
10.11
5' ss Seq
CGGGTAGGT
5' ss Score
8.53
Exon sequences
Seq C1 exon
ATCATTGATGACAAGGGCAATATCCAGCCTCCCAACACGGAAGGAAACATTGGCATCAGGATCAAGCCCACCAGGCCCATAGGCCTCTTCATGTACTATGAG
Seq A exon
AATAACCCAGAGAAAACAGCTGAAGTGGAATGTGGGGACTTTTATAACACTGGGGACAGAGCAACTATTGACGAAGAGGGCTACTTCTGGTTCCTTGGGAGGAGTGACGATGTCATCAATGCATCCGG
Seq C2 exon
ATACCGCGTTGGGCCAGCAGAAGTAGAGAATGCCCTGGCAGAGCACCCAGCGGTGGCTGAGTCTGCTGTGGTGAGCAGCCCGGACCCGGTTCGAGGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001417-'16-29,'16-26,17-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.353 A=0.116 C2=0.176
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(8.0=100)
A:
PF0050123=AMP-binding=PD(9.9=95.3)
C2:
PF131931=AMP-binding_C=PU(32.1=76.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCATTGATGACAAGGGCAATATCCA
R:
CTCGCCTCGAACCGGGTC
Band lengths:
202-330
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]