HsaEX6043365 @ hg19
Exon Skipping
Gene
ENSG00000178226 | PRSS36
Description
protease, serine, 36 [Source:HGNC Symbol;Acc:26906]
Coordinates
chr16:31154909-31159996:-
Coord C1 exon
chr16:31159716-31159996
Coord A exon
chr16:31157110-31157276
Coord C2 exon
chr16:31154909-31155158
Length
167 bp
Sequences
Splice sites
3' ss Seq
CTCTCTGGTTCTGCCTCCAGATC
3' ss Score
11.27
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GAATGGGACGCTGGAGCCCGCGGCCGAGTGGTCGGTACTGCTGGGCGTGCACTCCCAGGACGGGCCCCTGGACGGCGCGCACACCCGCGCAGTGGCCGCCATCGTGGTGCCGGCCAACTACAGCCAAGTGGAGCTGGGCGCCGACCTGGCCCTGCTGCGCCTGGCCTCACCCGCCAGCCTGGGCCCCGCCGTGTGGCCTGTCTGCCTGCCCCGCGCCTCACACCGCTTCGTGCACGGCACCGCCTGCTGGGCCACCGGCTGGGGAGACGTCCAGGAGGCAG
Seq A exon
ATCCTCTGCCTCTCCCCTGGGTGCTACAGGAAGTGGAGCTAAGGCTGCTGGGCGAGGCCACCTGTCAATGTCTCTACAGCCAGCCCGGTCCCTTCAACCTCACTCTCCAGATATTGCCAGGGATGCTGTGTGCTGGCTACCCAGAGGGCCGCAGGGACACCTGCCAG
Seq C2 exon
GGTGACTCTGGGGGGCCCCTGGTCTGTGAGGAAGGCGGCCGCTGGTTCCAGGCAGGAATCACCAGCTTTGGCTTTGGCTGTGGACGGAGAAACCGCCCTGGAGTTTTCACTGCTGTGGCTACCTATGAGGCATGGATACGGGAGCAGGTGATGGGTTCAGAGCCTGGGCCTGCCTTTCCCACCCAGCCCCAGAAGACCCAGTCAGATCCCCAGGAGCCCAGGGAGGAGAACTGCACCATTGCCCTGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000178226-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.405
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(39.2=100)
A:
PF0008921=Trypsin=FE(22.9=100)
C2:
PF0008921=Trypsin=PD(18.8=53.6),PF0008921=Trypsin=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTACAGCCAAGTGGAGCTG
R:
TTTCTCCGTCCACAGCCAAAG
Band lengths:
258-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)