BtaEX6109899 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000037397 | PRSS36
Description
protease, serine, 36 [Source:HGNC Symbol;Acc:HGNC:26906]
Coordinates
chr25:27495971-27499633:-
Coord C1 exon
chr25:27499353-27499633
Coord A exon
chr25:27498730-27498896
Coord C2 exon
chr25:27495971-27496220
Length
167 bp
Sequences
Splice sites
3' ss Seq
TTCTCTGGTTCTGTCCACAGACC
3' ss Score
12.23
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GAACGGGACCTTGGAGCCCGCGGCCGAGTGGTCGGTGGTACTGGGCGTGCACTCGCAGGACGGGCCCCTGGACGGCGCGCACGTCCGCGCGGTGGCCGCCATCCTGGTGCCGGACAACTACAGCAGCGTGGAACGGGGCGCCGACGTGGCCCTGCTGCGCCTGGCCTCGCCCGCCAGGTTGGGCCCCTCCGTGCGGCCCGTCTGCCTGCCCCGAGCCTCGCACCGCTTTGCTCAGGGCACCGCCTGCTGGGCCACCGGCTGGGGGGACGTCCAGGAGGAGG
Seq A exon
ACCCCCTGCCTCTCCCCTGGGTGCTACAAGAAGTAGAGCTGAGGTTGCTGGGAGAGGCTGCCTGTCAGTGTCTCTACAGCCGCCCTGGCCCCTTCAATCTCACTTTCCAGCTATTGCCGGGGATGCTATGTGCCGGCTACCGGGAAGGCCGCAGGGACACCTGCCAG
Seq C2 exon
GGAGACTCTGGGGGACCCCTGGTCTGCAAGGAAGGTGGTCGATGGTTCCAGGCAGGAATCACCAGCTTTGGCTTTGGCTGTGGACGGAGGAACCGCCCCGGAGTCTTCACTGCTGTGGCTCCCTATGAGGCATGGATAAGGGAACAGGTGTCAGGCTCAGAGCCTGGGCCTGCCTTCCCCACCCAGTCCCCGGAGGCCCAGTCAGGCCTCCCCGAGCCCATGAATGAGAATTGCACCATTGCCCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037397-'4-6,'4-5,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.310
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(39.2=100)
A:
PF0008921=Trypsin=FE(22.9=100)
C2:
PF0008921=Trypsin=PD(18.8=53.6),PF0008921=Trypsin=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAACTACAGCAGCGTGGAA
R:
CGTCCACAGCCAAAGCCAAAG
Band lengths:
255-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]