RnoEX6005098 @ rn6
Exon Skipping
Gene
ENSRNOG00000033343 | Prss36
Description
serine protease 36 [Source:RGD Symbol;Acc:1593186]
Coordinates
chr1:199383325-199393678:-
Coord C1 exon
chr1:199393398-199393678
Coord A exon
chr1:199390229-199390395
Coord C2 exon
chr1:199383325-199383574
Length
167 bp
Sequences
Splice sites
3' ss Seq
TTCTCTGGTTCTGCCCTCAGACC
3' ss Score
10.67
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GAATGGGACCTTGGAGCCTGCGGACGAATGGTCAGTCCTGCTGGGCGTGCACTCCCAGGACGGGCCCCTGGAAGGAGCGCACATGCGCTCAGTGGCCACCATCCTGGTACCGGACAACTACAGCAGAGTGGAACTGGGCGCTGACTTGGCTCTGCTGCGCCTGGCCTCGCCAGCCAAGCTGGGCCCCTCCGTGAAGCCAGTCTGCCTGCCTCGTGCCTCACACCTCTTCGCTCACGGAACTGCCTGCTGGGCCACTGGTTGGGGAGACGTCCAGGAGTCTG
Seq A exon
ACCCTCTGCCTGTCCCCTGGGTTCTACAGGAAGTAGAGCTAAAGTTGCTGGGAGAGACTGCCTGTCAATGTCTCTACAGTCGGCCTGGCCCTTTCAACCTGACTTTGCAGCTGTTGCCAGGAATGCTGTGTGCTGGCTATCCAGAGGGACGAAGGGACACCTGCCAG
Seq C2 exon
GGTGACTCTGGGGGACCGTTGGTCTGTGAGGATGGCGGCCGATGGTTCCTGGCGGGAATCACCAGCTTTGGCTTTGGCTGTGGACGGAGGAACCGCCCTGGGGTCTTCACTGCAGTGGCTCACTATGAGTCATGGATTCGGGAACACGTGATGGGTTCAGAACCTGGGCCTGCCTTTCCCAGCCAGCTCCAGAAGCCCCCGTCAGAACCCTGGGAGCCCAGAGAAGAAAACTGTACCTTTGCCCAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033343-'5-10,'5-7,7-10=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.252
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(39.2=100)
A:
PF0008921=Trypsin=FE(22.9=100)
C2:
PF0008921=Trypsin=PD(18.8=53.6),PF0008921=Trypsin=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGGACAACTACAGCAGAGT
R:
TCCACAGCCAAAGCCAAAGC
Band lengths:
257-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]