HsaEX6054822 @ hg38
Exon Skipping
Gene
ENSG00000033867 | SLC4A7
Description
solute carrier family 4 member 7 [Source:HGNC Symbol;Acc:HGNC:11033]
Coordinates
chr3:27421622-27424152:-
Coord C1 exon
chr3:27424037-27424152
Coord A exon
chr3:27422781-27422840
Coord C2 exon
chr3:27421622-27421779
Length
60 bp
Sequences
Splice sites
3' ss Seq
CCTTGTCTCCTGTTGGGCAGGAG
3' ss Score
5.98
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GTATTTTGGCCTCTCCCCAGTCTGCTCCTGGAAACTTGGACAATAGTAAAAGTGGAGAAATTAAAGGTAATGGAAGTGGTGGAAGCAGAGAAAATAGTACTGTTGACTTCAGCAAG
Seq A exon
GAGTCTGCCTCCTGGCACTGTAGTTGTGGCACACTGGGTGTGGGACTCAAGAGGCCCGCT
Seq C2 exon
GTTGATATGAATTTCATGAGAAAAATTCCTACGGGTGCTGAGGCATCCAACGTCCTGGTGGGCGAAGTAGACTTTTTGGAAAGGCCAATAATTGCATTTGTGAGACTGGCTCCTGCTGTCCTCCTTACAGGGTTGACTGAGGTCCCTGTTCCAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000033867_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.861 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=PU(16.2=76.5)
A:
PF075658=Band_3_cyto=FE(6.6=100)
C2:
PF075658=Band_3_cyto=FE(13.3=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAGTGGTGGAAGCAGAGA
R:
GGCCTTTCCAAAAAGTCTACTTCG
Band lengths:
132-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains