RnoEX0082867 @ rn6
Exon Skipping
Gene
ENSRNOG00000005957 | Slc4a7
Description
solute carrier family 4 member 7 [Source:RGD Symbol;Acc:621208]
Coordinates
chr15:11872359-11874677:-
Coord C1 exon
chr15:11874562-11874677
Coord A exon
chr15:11873157-11873216
Coord C2 exon
chr15:11872359-11872516
Length
60 bp
Sequences
Splice sites
3' ss Seq
CCCTGTCTCTTGTTGGGCAGGAG
3' ss Score
7.14
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GGATTTTGGCTTCTCCACAGTCTGCTCCTGGAAACCTGGACAGTAGTAAAAGTGGTGAAGTGAAAGGTAACGGAAGTGGAGGAAGCAGAGAAAATAGTACTGTTGACTTTAGCAAG
Seq A exon
GAGTCTGCCTCCTGGCACTGTAGTTGTGGCACACTGGGTGTGGGACTCAAGAGGCCCGCT
Seq C2 exon
GTTGACATGAATTTCATGAGGAAAATTCCTACAGGAGCTGAGGCATCCAATGTTTTGGTAGGAGAGGTGGATTTCTTGGAGAGACCTATCATTGCATTTGTGAGACTGGCTCCTGCAGTTCTCCTCTCAGGGTTGACTGAGGTCCCTGTGCCCACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005957_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.915 A=0.000 C2=0.003
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(14.2=100)
A:
PF075658=Band_3_cyto=FE(4.6=100)
C2:
PF075658=Band_3_cyto=FE(13.3=100)
Main Inclusion Isoform:
ENSRNOT00000008759fB13739
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTCTGCTCCTGGAAACCT
R:
GATGCCTCAGCTCCTGTAGGA
Band lengths:
147-207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]