HsaEX6054822 @ hg19
Exon Skipping
Gene
ENSG00000033867 | SLC4A7
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 7 [Source:HGNC Symbol;Acc:11033]
Coordinates
chr3:27463113-27465643:-
Coord C1 exon
chr3:27465528-27465643
Coord A exon
chr3:27464272-27464331
Coord C2 exon
chr3:27463113-27463270
Length
60 bp
Sequences
Splice sites
3' ss Seq
CCTTGTCTCCTGTTGGGCAGGAG
3' ss Score
5.98
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GTATTTTGGCCTCTCCCCAGTCTGCTCCTGGAAACTTGGACAATAGTAAAAGTGGAGAAATTAAAGGTAATGGAAGTGGTGGAAGCAGAGAAAATAGTACTGTTGACTTCAGCAAG
Seq A exon
GAGTCTGCCTCCTGGCACTGTAGTTGTGGCACACTGGGTGTGGGACTCAAGAGGCCCGCT
Seq C2 exon
GTTGATATGAATTTCATGAGAAAAATTCCTACGGGTGCTGAGGCATCCAACGTCCTGGTGGGCGAAGTAGACTTTTTGGAAAGGCCAATAATTGCATTTGTGAGACTGGCTCCTGCTGTCCTCCTTACAGGGTTGACTGAGGTCCCTGTTCCAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000033867-'18-18,'18-17,20-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.819 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=PU(15.2=75.0)
A:
PF075658=Band_3_cyto=FE(6.6=100)
C2:
PF075658=Band_3_cyto=FE(13.3=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAGTGGTGGAAGCAGAGA
R:
GGCCTTTCCAAAAAGTCTACTTCG
Band lengths:
132-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)