DreEX0073098 @ danRer10
Exon Skipping
Gene
ENSDARG00000073952 | slc4a7
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 7 [Source:ZFIN;Acc:ZDB-GENE-140106-104]
Coordinates
chr16:42816777-42821949:-
Coord C1 exon
chr16:42821834-42821949
Coord A exon
chr16:42819744-42819806
Coord C2 exon
chr16:42816777-42816934
Length
63 bp
Sequences
Splice sites
3' ss Seq
GTCTGTCTGGTTGATATCAGGAC
3' ss Score
6.36
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
GTCTTCTTGCGTCGCCCCAGTCGGCCCCGGGCATCCTGGAGAACAGTAAGTCCAGTGAAAGCCGAATAAATGGCACCGGTGGCAGCAGGGAAAATAGCACAGTGGACTTCAGCAGA
Seq A exon
GACAGCCAGTCGCCTTTTCACTGTAGTTGCGGCTCTCTGGGAGTGGGCACCAAAAGGCCTGCT
Seq C2 exon
GTGGACATGAATTTTATGAAGAAAATCCCGCCTGGGGCTGAAGCTTCAAATGTTTTGGTGGGGGAGGTTGATTTCCTTGAGCGTCCAATCATTGCCTTTATCCGACTCTCGCCTGCTGTTCTTCTCACCGGACTGACCGAAGTGCCCGTTCCGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000073952_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.754 A=0.000 C2=0.011
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(14.2=100)
A:
PF075658=Band_3_cyto=FE(7.3=100)
C2:
PF075658=Band_3_cyto=FE(19.8=100)
Main Inclusion Isoform:
ENSDART00000112879fB6094
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGCAGGGAAAATAGCACA
R:
AGGCAATGATTGGACGCTCAA
Band lengths:
133-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]