HsaEX6055553 @ hg38
Exon Skipping
Gene
ENSG00000178055 | PRSS42
Description
protease, serine 42 [Source:HGNC Symbol;Acc:HGNC:30716]
Coordinates
chr3:46830404-46833206:-
Coord C1 exon
chr3:46832992-46833206
Coord A exon
chr3:46831876-46832036
Coord C2 exon
chr3:46830404-46830493
Length
161 bp
Sequences
Splice sites
3' ss Seq
CTGATGATCTTCTTTGATAGGAG
3' ss Score
6.74
5' ss Seq
CAAGTAAAT
5' ss Score
4.44
Exon sequences
Seq C1 exon
CCGTTTCCATTACAGTGTCAAGATGGGAGATCGGAGTGTCTATAATGAAAACACAAGTGTGGTGGTCTCAGTCCAAAGAGCTTTTGTCCACCCTAAGTTCTCAACAGTTACAACCATTCGAAATGACCTTGCCCTTCTCCAGCTCCAACATCCTGTGAATTTTACCTCAAACATCCAGCCTATCTGCATCCCTCAGGAGAATTTCCAGGTGGAAG
Seq A exon
GAGAGAAACTTGCATCAGAAATTCTTCAGGATGTGGACCAATACATCATGTGCTATGAGGAATGTAATAAGATAATACAGAAGGCCTTGTCATCTACTAAGGATGTAATAATAAAAGGGATGGTCTGTGGCTATAAAGAACAAGGAAAGGATTCTTGTCAA
Seq C2 exon
GGAGATTCTGGGGGCCGCTTGGCCTGTGAATATAATGACACATGGGTCCAGGTAGGGATTGTGAGCTGGGGCATCGGCTGTGGTCGCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000178055_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(87.8=100)
A:
PF0008921=Trypsin=FE(24.8=100)
C2:
PF0008921=Trypsin=PD(13.1=93.3)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGGGAGATCGGAGTGTCT
R:
ATCCCTACCTGGACCCATGTG
Band lengths:
254-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains