HsaEX6055553 @ hg19
Exon Skipping
Gene
ENSG00000178055 | PRSS42
Description
protease, serine, 42 [Source:HGNC Symbol;Acc:30716]
Coordinates
chr3:46871032-46874696:-
Coord C1 exon
chr3:46874434-46874696
Coord A exon
chr3:46873366-46873523
Coord C2 exon
chr3:46871032-46871983
Length
158 bp
Sequences
Splice sites
3' ss Seq
ATGATCTTCTTTGATAGGAGAGA
3' ss Score
-15.27
5' ss Seq
CAAGTAAAT
5' ss Score
4.44
Exon sequences
Seq C1 exon
CCGTTTCCATTACAGTGTCAAGATGGGAGATCGGAGTGTCTATAATGAAAACACAAGTGTGGTGGTCTCAGTCCAAAGAGCTTTTGTCCACCCTAAGTTCTCAACAGTTACAACCATTCGAAATGACCTTGCCCTTCTCCAGCTCCAACATCCTGTGAATTTTACCTCAAACATCCAGCCTATCTGCATCCCTCAGGAGAATTTCCAGGTGGAAGGTAGGACCAGGTGCTGGGTGACCGGATGGGGCAAAACACCAGAACGTG
Seq A exon
AGAAACTTGCATCAGAAATTCTTCAGGATGTGGACCAATACATCATGTGCTATGAGGAATGTAATAAGATAATACAGAAGGCCTTGTCATCTACTAAGGATGTAATAATAAAAGGGATGGTCTGTGGCTATAAAGAACAAGGAAAGGATTCTTGTCAA
Seq C2 exon
GGAGATTCTGGGGGCCGCTTGGCCTGTGAATATAATGACACATGGGTCCAGGTAGGGATTGTGAGCTGGGGCATCGGCTGTGGTCGCTGAGGGTTGCCTGGAGTTTATACAGAAATTGGTGTCTACAGTAAGTGGCTGATTGCAGTGGTGGATCAGGCTACCTGTTTGTATCCAGCAGTGTTCCTCATCTTAGTCCTGCATTTGGTGCTGCCCCTGGGCATCCTGGTGGCCCAGTGATCACCCCAGCCCACTCCCCTTTTGTTTCTGAGTCTCATACTAGGCCTCTCCTCCAACCTCCCACTCCTTCTCAATGCCGTTTCTGAAAATCCCAGTTGGAATCCACGGGCCCTCTGGAGATCCATACAATAGAGCACAGCAGGGAGACTGGGGCCTGGAAAGTGCCCCTGCCTGGTGCTCTGGTCACCTGCCTCAGCCATGCCTGCACCAGGGCTGTGCTCTGGCTAGTGGGAAGGAGGGGGTGAACTAATTCCAGCTAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000178055-'5-5,'5-4,6-5=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(40.7=100)
A:
PF0008921=Trypsin=FE(24.8=100)
C2:
PF0008921=Trypsin=PD(3.7=30.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGCCTATCTGCATCCCTC
R:
TGATCCACCACTGCAATCAGC
Band lengths:
245-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)