RnoEX6037965 @ rn6
Exon Skipping
Gene
ENSRNOG00000031971 | Prss42
Description
serine protease 42 [Source:RGD Symbol;Acc:1562548]
Coordinates
chr8:119066077-119070630:+
Coord C1 exon
chr8:119066077-119066339
Coord A exon
chr8:119067719-119067879
Coord C2 exon
chr8:119069838-119070630
Length
161 bp
Sequences
Splice sites
3' ss Seq
CTGCTGATCTTTTTCATTAGCAC
3' ss Score
5.77
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
CCGAGTCCAGTACAACGTCAAGATGGGCGATCGGAGTGTCTACCGGCAAAATACAAGTCTGGTGATTCCCATCCAGAACATCTTTGTCCACCCTAAGTTCTCAACAACTACCGTTGTCCAAAATGACATTGCCCTTCTCAAGCTCCAACAGCCCGTGAATTTCACCTCTAGCATCCATCCTATTTGTGTCCCTACGGGGACTTTTCATGTGAAAGCGGGAACCAAATGCTGGGTGACAGGATGGGGCAAACCAGATCCAGGTG
Seq A exon
CACCACAAATTCCGACAGAAATTCTCCAGGAGGTGGACCAAAGCATCATCCTTTATGAGGAATGTAATGAGATGTTGAAGAAAATGGCATCGACTTCTGTTGATCTTGTCAAGAGAGGCATGGTCTGTGCTTACAAAGAAGGAGGAAAGGATGCTTGCCAG
Seq C2 exon
GGGGATTCTGGAGGCCCGTTGTCCTGTGAATTTGATAACAGATGGGTGCAGATAGGAGTTGTGAGCTGGGGCATTGGCTGTGGTCGCAAAGGACACCCTGGAGTTTATACAGACGTTGCCTTCTACAACAAGTGGCTAATCACCGTGGTGAACCAGACTGCTTGTTTGCATCCAGTGGTCTTCCTCATCTTACTGCTGTGTTTGCTGACCTTGTGACATCCTGTGGACATGGTGATGGCTCATCTCATTCCCATCCTCTCTCGGAGCCCCTCTCGACTGACCTTCCCAATACCCTTTCTTCAAATCCTATTTGAGGATCCCTTGCCCCAGGGAAATAAGCAGGGGATCTGAGAGACTTCAAAGTGTTCTGCCTGGTGATCTGGTTGCCATCCTTGGCCTCAAGCCTCCTGAGCTGTGCTCTGCCTGGCAGTAATGAAGGTTAGTCAGTTCCAGTTGGAAGGCAAACTGGCCTGCCAGTTAAATGACAGTGACCTGGGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000031971-'3-5,'3-4,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.019 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(37.9=100)
A:
PF0008921=Trypsin=FE(22.8=100)
C2:
PF0008921=Trypsin=PD(19.4=62.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCAAATGCTGGGTGACAGG
R:
ACAAGGTCAGCAAACACAGCA
Band lengths:
258-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]