MmuEX6069398 @ mm10
Exon Skipping
Gene
ENSMUSG00000044664 | Prss42
Description
protease, serine 42 [Source:MGI Symbol;Acc:MGI:2665280]
Coordinates
chr9:110799158-110803754:+
Coord C1 exon
chr9:110799158-110799420
Coord A exon
chr9:110800811-110800971
Coord C2 exon
chr9:110802995-110803754
Length
161 bp
Sequences
Splice sites
3' ss Seq
CTGCTGGTCTTTTTCATCAGCAC
3' ss Score
6.23
5' ss Seq
CAGGTACGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
CCGAATCCAGTACAACGTCAAGGTGGGCGATCGGAGTGTCTACCGACAGAATACAAGTCTGGTGATTCCCATCAAGACCATCTTTGTCCACCCTAAGTTCTCAACAACTATCGTCGTTAAAAATGATATTGCTCTTCTCAAGCTCCAACACCCTGTGAATTTCACCACTAACATATACCCTGTCTGCATCCCTTCAGAGAGTTTTCCTGTAAAAGCTGGGACCAAATGTTGGGTGACAGGATGGGGAAAACTAGTGCCAGGCG
Seq A exon
CACCGGATGTTCCGACAGAAATCCTCCAGGAGGTGGACCAAAATGTCATCCTTTATGAGGAATGTAATGAGATGCTGAAGAAAGCTACCTCAAGTTCTGTGGATCTCGTCAAGAGAGGCATGGTCTGTGGCTATAAAGAAAGAGGAAAGGACGCCTGCCAG
Seq C2 exon
GGAGATTCTGGAGGCCCGATGTCCTGTGAATTTGAAAACAAATGGGTGCAGGTAGGAGTTGTGAGCTGGGGCATCAGCTGTGGTCGCAAAGGATACCCTGGAGTTTATACAGACGTTGCCTTCTACAGCAAGTGGCTAATTGCCGTGGTGAACCAGGCAGATTGTTTGCATCCAGTGGTCTTCCTCGTCTTACTGCTGTGTTCGCTGACCTCATGACATCCTGTGGACACGGTGATCTCATTCCTATCCTCTTTAGAGCCCCTCTTGTTTGACCTTCCCAATGCCCTTTCTTCAAATCCCTTGCCCCAGAGAGAGCCACAGTGAAATATGTCGGGGATCTGAGAGACTTGAAAGTGTTCTGCCTGGTGCTCTGGTCACCATCCTTGGCCACAGCACTCCTGAGTTGTGCTCTGCCTGGCAGTAACGAAGGTTAGTCAGTTCCAGTTAGAAGACAAACTGGCCTGCCAGGTCAATCGCAGTGACCTCAGCAAGGATGTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044664-'1-8,'1-5,12-8=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(37.9=100)
A:
PF0008921=Trypsin=FE(22.8=100)
C2:
PF0008921=Trypsin=PD(19.4=62.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTGACAGGATGGGGAAAAC
R:
AGGATGTCATGAGGTCAGCGA
Band lengths:
255-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types