MmuEX6069398 @ mm9
Exon Skipping
Gene
ENSMUSG00000044664 | Prss42
Description
protease, serine, 42 [Source:MGI Symbol;Acc:MGI:2665280]
Coordinates
chr9:110701662-110706240:+
Coord C1 exon
chr9:110701662-110701924
Coord A exon
chr9:110703315-110703475
Coord C2 exon
chr9:110705499-110706240
Length
161 bp
Sequences
Splice sites
3' ss Seq
CTGCTGGTCTTTTTCATCAGCAC
3' ss Score
6.23
5' ss Seq
CAGGTACGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
CCGAATCCAGTACAACGTCAAGGTGGGCGATCGGAGTGTCTACCGACAGAATACAAGTCTGGTGATTCCCATCAAGACCATCTTTGTCCACCCTAAGTTCTCAACAACTATCGTCGTTAAAAATGATATTGCTCTTCTCAAGCTCCAACACCCTGTGAATTTCACCACTAACATATACCCTGTCTGCATCCCTTCAGAGAGTTTTCCTGTAAAAGCTGGGACCAAATGTTGGGTGACAGGATGGGGAAAACTAGTGCCAGGCG
Seq A exon
CACCGGATGTTCCGACAGAAATCCTCCAGGAGGTGGACCAAAATGTCATCCTTTATGAGGAATGTAATGAGATGCTGAAGAAAGCTACCTCAAGTTCTGTGGATCTCGTCAAGAGAGGCATGGTCTGTGGCTATAAAGAAAGAGGAAAGGACGCCTGCCAG
Seq C2 exon
GGAGATTCTGGAGGCCCGATGTCCTGTGAATTTGAAAACAAATGGGTGCAGGTAGGAGTTGTGAGCTGGGGCATCAGCTGTGGTCGCAAAGGATACCCTGGAGTTTATACAGACGTTGCCTTCTACAGCAAGTGGCTAATTGCCGTGGTGAACCAGGCAGATTGTTTGCATCCAGTGGTCTTCCTCGTCTTACTGCTGTGTTCGCTGACCTCATGACATCCTGTGGACACGGTGATCTCATTCCTATCCTCTTTAGAGCCCCTCTTGTTTGACCTTCCCAATGCCCTTTCTTCAAATCCCTTGCCCCAGAGAGAGCCACAGTGAAATATGTCGGGGATCTGAGAGACTTGAAAGTGTTCTGCCTGGTGCTCTGGTCACCATCCTTGGCCACAGCACTCCTGAGTTGTGCTCTGCCTGGCAGTAACGAAGGTTAGTCAGTTCCAGTTAGAAGACAAACTGGCCTGCCAGGTCAATCGCAGTGACCTCAGCAAGGATGTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044664-'4-3,'4-2,5-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(37.9=100)
A:
PF0008921=Trypsin=FE(22.8=100)
C2:
PF0008921=Trypsin=PD(19.4=62.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTGACAGGATGGGGAAAAC
R:
AGGATGTCATGAGGTCAGCGA
Band lengths:
255-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: