HsaEX6055702 @ hg19
Exon Skipping
Gene
ENSG00000164045 | CDC25A
Description
cell division cycle 25 homolog A (S. pombe) [Source:HGNC Symbol;Acc:1725]
Coordinates
chr3:48225290-48228269:-
Coord C1 exon
chr3:48228193-48228269
Coord A exon
chr3:48226143-48226185
Coord C2 exon
chr3:48225290-48225326
Length
43 bp
Sequences
Splice sites
3' ss Seq
GGTTTTTTTTTTCCCCATAGGTT
3' ss Score
12.03
5' ss Seq
AAAGTATGT
5' ss Score
6.93
Exon sequences
Seq C1 exon
TGATTATGAGCAACCACTGGAGGTGAAGAACAACAGTAATCTGCAGAGAATGGGCTCCTCCGAGTCAACAGATTCAG
Seq A exon
GTTTCTGTCTAGATTCTCCTGGGCCATTGGACAGTAAAGAAAA
Seq C2 exon
CCTTGAAAATCCTATGAGAAGAATACATTCCCTACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164045-'2-5,'2-4,3-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.885
Domain overlap (PFAM):
C1:
NO
A:
PF066178=M-inducer_phosp=PU(18.3=73.3)
C2:
PF066178=M-inducer_phosp=FE(20.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGAGCAACCACTGGAGGTG
R:
GGTAGGGAATGTATTCTTCTCATAGG
Band lengths:
109-152
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)