RnoEX0018901 @ rn6
Exon Skipping
Gene
ENSRNOG00000020737 | Cdc25a
Description
cell division cycle 25A [Source:RGD Symbol;Acc:621498]
Coordinates
chr8:117954836-117956891:+
Coord C1 exon
chr8:117954836-117954912
Coord A exon
chr8:117955911-117955953
Coord C2 exon
chr8:117956855-117956891
Length
43 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTTTATTTCTCAAAGGTT
3' ss Score
7.88
5' ss Seq
AAAGTATGT
5' ss Score
6.93
Exon sequences
Seq C1 exon
TGACTATGAGAAACCAATGGACGTGAGAAATAGCAGCAGTCTACAGAGAATGGGCTCCTCTGAATCGACTGATTCAG
Seq A exon
GTTTCTGTCTAGATTCTCCTGGGCCCTTGGACAGTAAAGAAAA
Seq C2 exon
CCTTGAAATTTCCCTGAGGAGAATAAATTGCCTACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020737_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.667 C2=0.077
Domain overlap (PFAM):
C1:
NO
A:
PF066178=M-inducer_phosp=PU(4.5=73.3)
C2:
PF066178=M-inducer_phosp=FE(4.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAGAAACCAATGGACGTGAGA
R:
GGTAGGCAATTTATTCTCCTCAGGG
Band lengths:
108-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]