MmuEX0010348 @ mm10
Exon Skipping
Gene
ENSMUSG00000032477 | Cdc25a
Description
cell division cycle 25A [Source:MGI Symbol;Acc:MGI:103198]
Coordinates
chr9:109877161-109879267:+
Coord C1 exon
chr9:109877161-109877234
Coord A exon
chr9:109878268-109878310
Coord C2 exon
chr9:109879231-109879267
Length
43 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTTTATTTCTCAAAGGTT
3' ss Score
7.88
5' ss Seq
AAAGTATGT
5' ss Score
6.93
Exon sequences
Seq C1 exon
TGACTGTGAGAAAATGGAAGTGAGAAATAACAGCAGTCTACAGAGAATGGGCTCCTCAGAATCGACCGATTCAG
Seq A exon
GTTTCTGTCTAGATTCTCCTGGGCCCTTGGACAGTAAAGAAAA
Seq C2 exon
CCTTGAAATTTCCCTGACGAGAATAAATTCCCTACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032477_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.733 C2=0.439
Domain overlap (PFAM):
C1:
NO
A:
PF066178=M-inducer_phosp=PU(4.7=73.3)
C2:
PF066178=M-inducer_phosp=FE(5.1=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACTGTGAGAAAATGGAAGTGAGA
R:
GGTAGGGAATTTATTCTCGTCAGGG
Band lengths:
110-153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types