MmuEX0010348 @ mm9
Exon Skipping
Gene
ENSMUSG00000032477 | Cdc25a
Description
cell division cycle 25 homolog A (S. pombe) [Source:MGI Symbol;Acc:MGI:103198]
Coordinates
chr9:109779665-109781771:+
Coord C1 exon
chr9:109779665-109779738
Coord A exon
chr9:109780772-109780814
Coord C2 exon
chr9:109781735-109781771
Length
43 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTTTATTTCTCAAAGGTT
3' ss Score
7.88
5' ss Seq
AAAGTATGT
5' ss Score
6.93
Exon sequences
Seq C1 exon
TGACTGTGAGAAAATGGAAGTGAGAAATAACAGCAGTCTACAGAGAATGGGCTCCTCAGAATCGACCGATTCAG
Seq A exon
GTTTCTGTCTAGATTCTCCTGGGCCCTTGGACAGTAAAGAAAA
Seq C2 exon
CCTTGAAATTTCCCTGACGAGAATAAATTCCCTACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032477_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.700 C2=0.385
Domain overlap (PFAM):
C1:
NO
A:
PF066178=M-inducer_phosp=PU(4.7=73.3)
C2:
PF066178=M-inducer_phosp=FE(5.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACTGTGAGAAAATGGAAGTGAGA
R:
GGTAGGGAATTTATTCTCGTCAGGG
Band lengths:
110-153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: