HsaEX6056674 @ hg19
Exon Skipping
Gene
ENSG00000157445 | CACNA2D3
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 3 [Source:HGNC Symbol;Acc:15460]
Coordinates
chr3:55021710-55041869:+
Coord C1 exon
chr3:55021710-55021780
Coord A exon
chr3:55038790-55038865
Coord C2 exon
chr3:55041817-55041869
Length
76 bp
Sequences
Splice sites
3' ss Seq
CTTCCATTTCTTTCCTGTAGAAT
3' ss Score
11.65
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
ACTGGAGACTTTTTTGGTGAGATCGAGGGAGCTGTGATGAACAAATTGCTAACAATGGGCTCCTTTAAAAG
Seq A exon
AATTACCCTTTATGACTACCAAGCCATGTGTAGAGCCAACAAGGAAAGCAGCGATGGCGCCCATGGCCTCCTGGAT
Seq C2 exon
CCTTATAATGCCTTCCTCTCTGCAGTAAAATGGATCATGACAGAACTTGTCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000157445-'43-45,'43-43,44-45=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTTGGTGAGATCGAGGGAGC
R:
ACAAGTTCTGTCATGATCCATTTT
Band lengths:
111-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)