GgaEX0007479 @ galGal4
Exon Skipping
Gene
ENSGALG00000005400 | CACNA2D3
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 3 [Source:HGNC Symbol;Acc:HGNC:15460]
Coordinates
chr12:7684376-7696893:+
Coord C1 exon
chr12:7684376-7684446
Coord A exon
chr12:7693559-7693634
Coord C2 exon
chr12:7696841-7696893
Length
76 bp
Sequences
Splice sites
3' ss Seq
TTTTCTGTTCTTCTCTGTAGAAT
3' ss Score
11.92
5' ss Seq
GACGTAAGT
5' ss Score
10.93
Exon sequences
Seq C1 exon
ACTGGTAACTTTTTTGGGGAGGTTGAAGGGGCTGTGATGAACAAATTGCTAACAATGGGCTCCTTTAAGAG
Seq A exon
AATTACACTTTATGACTACCAGGCCATGTGTAGAACAAACAAAGAGAGTAGCGACAGTGCCCATAGCTTACTGGAC
Seq C2 exon
CCTTATAATGCCTTCTTTGCTGCAGTAAAATGGATTATGACAGAGCTTGTCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005400_MULTIEX1-2/3=C1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTTGGGGAGGTTGAAGGGG
R:
ACAAGCTCTGTCATAATCCATTTTAC
Band lengths:
111-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]