BtaEX6094564 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013117 | CACNA2D3
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 3 [Source:HGNC Symbol;Acc:HGNC:15460]
Coordinates
chr22:46540199-46558961:-
Coord C1 exon
chr22:46558891-46558961
Coord A exon
chr22:46542794-46542869
Coord C2 exon
chr22:46540199-46540251
Length
76 bp
Sequences
Splice sites
3' ss Seq
CTTTCCCTTCTCTTCTATAGAAT
3' ss Score
10.83
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
ACTGGAGACTTTTTTGGTGAGGTGGAGGGAGCTGTGATGAACAAATTGTTAACAATGGGCTCCTTTAAAAG
Seq A exon
AATTACCCTTTATGACTATCAAGCCATGTGCAGGGCCAACAAGGAGAGCAGTGACGGCGCCCACGGTCTTCTGGAT
Seq C2 exon
CCTTATAATGCCTTCCTTGCTGCAGTGAAATGGATAATGACAGAACTTGTCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013117-'31-28,'31-27,33-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTTGGTGAGGTGGAGGGAG
R:
ACAAGTTCTGTCATTATCCATTTCAC
Band lengths:
111-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]