HsaEX6057506 @ hg19
Exon Skipping
Gene
ENSG00000144821 | MYH15
Description
myosin, heavy chain 15 [Source:HGNC Symbol;Acc:31073]
Coordinates
chr3:108139935-108149769:-
Coord C1 exon
chr3:108149679-108149769
Coord A exon
chr3:108147339-108147728
Coord C2 exon
chr3:108139935-108140061
Length
390 bp
Sequences
Splice sites
3' ss Seq
AAAATTATTTCTTGCTACAGACT
3' ss Score
5.51
5' ss Seq
AAGGTAGAT
5' ss Score
7.24
Exon sequences
Seq C1 exon
AAAAGAATTAGAATTGAGTCAGATGAATTCAAAAGTGGAGAATGAGAAAGGCCTGGTAGCTCAGCTTCAGAAGACGGTTAAAGAGCTTCAG
Seq A exon
ACTCAAATAAAGGATTTGAAAGAGAAACTAGAAGCTGAAAGGACCACTCGAGCCAAGATGGAAAGGGAGAGAGCTGACCTCACCCAAGACCTGGCTGACTTGAATGAGAGGCTGGAGGAGGTAGGAGGATCCAGTTTGGCTCAGCTGGAAATAACTAAGAAACAGGAAACCAAATTCCAGAAGCTGCACCGAGACATGGAAGAGGCCACTCTGCACTTTGAGACAACTTCTGCATCTTTGAAGAAGAGACATGCAGACAGCCTGGCTGAGCTCGAGGGCCAGGTAGAAAATCTACAGCAGGTCAAGCAGAAACTGGAAAAAGACAAGAGTGACTTGCAGCTAGAAGTAGATGACCTCCTGACCCGTGTTGAGCAGATGACAAGAGCTAAG
Seq C2 exon
GCAAATGCTGAGAAACTCTGTACTCTATATGAAGAGCGCTTGCATGAAGCAACTGCAAAGCTAGATAAGGTGACTCAGTTGGCAAATGACCTGGCAGCACAAAAGACAAAGCTGTGGAGTGAGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144821-'28-29,'28-28,29-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.677 A=0.592 C2=0.023
Domain overlap (PFAM):
C1:
PF131661=AAA_13=FE(12.4=100),PF045827=Reo_sigmaC=FE(22.4=100),PF087025=Fib_alpha=FE(26.1=100),PF0157614=Myosin_tail_1=FE(3.5=100)
A:
PF131661=AAA_13=PD(29.8=55.4),PF045827=Reo_sigmaC=PD(15.7=16.2),PF087025=Fib_alpha=PD(13.9=12.3),PF0157614=Myosin_tail_1=FE(15.0=100)
C2:
PF0157614=Myosin_tail_1=FE(4.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGAGTCAGATGAATTCAAAAGTGG
R:
CACTCTCACTCCACAGCTTTGT
Band lengths:
206-596
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)